Robert Bensch

PhD Student

University of Freiburg
Department of Computer Science
Core Facility Image Analysis
Pattern Recognition and Image Processing

Office location:
Georges-Köhler-Allee, Building 052, 2nd floor (1. OG), Room 01-043
79110 Freiburg, Germany

Phone: +49-761-203-8266
E-Mail: bensch AT informatik.uni-freiburg.de

Personal	Publications & Awards	Projects	Teaching

Publications (Master's Thesis and Awards below)

2019

Journal

U-Net – Deep Learning for Cell Counting, Detection, and Morphometry Paper

doi> Project

Thorsten Falk, Dominic Mai, Robert Bensch, Özgün Çiçek, Ahmed Abdulkadir, Yassine Marrakchi, Anton Böhm, J. Deubner, Z. Jäckel, K. Seiwald, A. Dovzhenko, O. Tietz, C. Dal Bosco, S. Walsh, D. Saltukoglu, T. Tay, M. Prinz, K. Palme, M. Simons, I. Diester, Thomas Brox, Olaf Ronneberger

Nature Methods, 16: 67-70, 2019

2018

Journal

Data-Driven Modeling of Intracellular Auxin Fluxes Indicates a Dominant Role of the ER in Controlling Nuclear Auxin Uptake doi> Code/data

A. Middleton, C. Dal Bosco, P. Chlap, Robert Bensch, H. Harz, F. Ren, S. Bergmann, S. Wend, W. Weber, K. Hayashi, M. Zurbriggen, R. Uhl, Olaf Ronneberger, K. Palme, C. Fleck, A. Dovzhenko

Cell Reports, 22(11): 3044--3057, Mar 2018

2017

Journal

An objective comparison of cell-tracking algorithms doi>

V. Ulman, M. Maška, K. Magnusson, Olaf Ronneberger, C. Haubold, N. Harder, P. Matula, P. Matula, D. Svoboda, M. Radojevic, I. Smal, K. Rohr, J. Jaldén, H. Blau, O. Dzyubachyk, B. Lelieveldt, P. Xiao, Y. Li, S. Cho, A. Dufour, J. Olivo-Marin, C. Reyes-Aldasoro, J. Solis-Lemus, Robert Bensch, Thomas Brox, J. Stegmaier, R. Mikut, S. Wolf, F. Hamprecht, T. Esteves, P. Quelhas, Ö. Demirel, L. Malmström, F. Jug, P. Tomancák, E. Meijering, A. Muñoz-Barrutia, M. Kozubek, C. Ortiz-de-Solor

Nature Methods, 14: 1141-1152, 2017

Spatiotemporal Deformable Prototypes for Motion Anomaly Detection doi> Code/data

Robert Bensch, N. Scherf, J. Huisken, Thomas Brox, Olaf Ronneberger

International Journal of Computer Vision, 122(3): 502--523, May 2017

2015

Journal

Spontaneous and electric field-controlled front-rear polarization of human keratinocytes doi>

D. Saltukoglu, J. Grünewald, N. Strohmeyer, Robert Bensch, M. Ulbrich, Olaf Ronneberger, M. Simons

Molecular Biology of the Cell, 26(24): 4373--4386, Dec 2015

The polarity protein Inturned links NPHP4 to Daam1 to control the subapical actin network in multiciliated cells doi>

T. Yasunaga, S. Hoff, C. Schell, M. Helmstädter, O. Kretz, S. Kuechlin, T. Yakulov, C. Engel, B. Müller, Robert Bensch, Olaf Ronneberger, T. Huber, S. Lienkamp, G. Walz

Journal of Cell Biology, 211(5): 963--973, 2015

Conference

Cell segmentation and tracking in phase contrast images using graph cut with asymmetric boundary costs Paper

doi> Code/data

Robert Bensch, Olaf Ronneberger

IEEE International Symposium on Biomedical Imaging (ISBI): 1220--1223, 2015

Spatiotemporal Deformable Prototypes for Motion Anomaly Detection Paper

doi> Code/data

Robert Bensch, Thomas Brox, Olaf Ronneberger

British Machine Vision Conference (BMVC), BMVA Press: 189.1--189.12, 2015

2013

Journal

Non-directional radial intercalation dominates deep cell behavior during zebrafish epiboly doi>

Robert Bensch, S. Song, Olaf Ronneberger, W. Driever

Biology Open, 2(8): 845--854, 2013

2012

Journal

Influence of cell-to-cell variability on spatial pattern formation doi>

B. Greese, K. Wester, Robert Bensch, Olaf Ronneberger, J. Timmer, M. Hülskamp, C. Fleck

IET Systems Biology, 6(4): 143--153, 2012

Master's Thesis

Quantitative Analyse der Musterbildungsprozesse von Trichomen in 4D Volumendaten

Robert Bensch

Albert-Ludwigs-Universität Freiburg, Germany, June 2008

Awards

2015	Among the 18 finalists selected for the Best Student Paper Awards at ISBI 2015 conference
2015	Bitplane Attendance Awards 2015 in conjunction with the 3rd Cell Tracking Challenge at ISBI 2015 conference
2008	LBBW-Immobilien-Förderpreis 2008 for the master's thesis "Quantitative Analyse der Musterbildungsprozesse von Trichomen in 4D Volumendaten", University of Freiburg, Germany (Die Nachwuchs-Förderpreise der Albert-Ludwigs-Universität 2008; Fotogalerie Preisverleihung 2008)