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2013
Journal
Semi-automatic determination of cell surface areas used in systems biology   doi>
V. Morath, Margret Keuper, M. Rodriguez-Franco, S. Deswal, G. Fiala, B. Blumenthal, D. Kaschek, J. Timmer, G. Neuhaus, S. Ehl, Olaf Ronneberger, W. Schamel
Frontiers in Bioscience, Elite, 5: 533-545, 2013
Functional and Structural MRI Biomarkers to Detect pre-clinical Neurodegeneration   doi>
Ahmed Abdulkadir, Olaf Ronneberger, R. Wolf, B. Pfleiderer, C. Saftf, S. Klöppel
Current Alzheimer Research, 10(2): 125--134, 2013
Variational attenuation correction in two-view confocal microscopy   PaperSchmidt2013VariationalAttenuationCorrectionInTwo-ViewConfocalMicroscopy.pdf doi>
Thorsten Schmidt, J. Dürr, Margret Keuper, T. Blein, K. Palme, Olaf Ronneberger
BMC Bioinformatics, 14(1): 366, Dec 2013
Non-directional radial intercalation dominates deep cell behavior during zebrafish epiboly   doi>
Robert Bensch, S. Song, Olaf Ronneberger, W. Driever
Biology Open, 2(8): 845--854, 2013
Grey matter atrophy pattern in elderly with subjective memory impairment  
J. Peter, L. Scheef, Ahmed Abdulkadir, H. Boecker, M. Henekah, M. Wagnergh, A. Kopparag, S. Klöppel, F. Jessen
Alzheimers and Dementia, in press, 2013

Conference
Distances based on Non-rigid Alignment for Comparison of Different Object Instances  
Benjamin Drayer, Thomas Brox
Pattern Recognition (GCPR 2013), Springer, LNCS, Vol.8142: 215-224, 2013
Discriminative Detection and Alignment in Volumetric Data   Papergcpr2013_dmai.pdf doi>
Dominic Mai, Philipp Fischer, T. Blein, J. Dürr, K. Palme, Thomas Brox, Olaf Ronneberger
Pattern Recognition (GCPR 2013), Springer, LNCS, Vol.8142: 205-214, 2013
Joint 3D Cell Segmentation and Classification in the Arabidopsis Root using Energy Minimization and Shape Priors   doi>
Kun Liu, Thorsten Schmidt, T. Blein, J. Dürr, K. Palme, Olaf Ronneberger
IEEE International Symposium on Biomedical Imaging (ISBI): 422--425, 2013
Fast Trust Region for Segmentation   PaperGSB-cvpr13.pdf
L. Gorelick, Frank R. Schmidt, Y. Boykov
IEEE International Conference on Computer Vision and Pattern Recognition (CVPR), Jun 2013
A Unified Video Segmentation Benchmark: Annotation, Metrics and Analysis   Papervsb100_iccv13_new.pdf Code/data
F. Galasso, Naveen Shankar Nagaraja, T. Cardenas, Thomas Brox, B. Schiele
IEEE International Conference on Computer Vision (ICCV), Dec 2013
Point-Based 3D Reconstruction of Thin Objects   Paperummenhofer2013Point.pdf
Benjamin Ummenhofer, Thomas Brox
IEEE International Conference on Computer Vision (ICCV), 2013
Blind deconvolution of widefield fluorescence microscopic data by regularization of the optical transfer function (OTF)   Paperdeconv.pdf
Margret Keuper, Thorsten Schmidt, Maja Temerinac-Ott, J. Padeken, P. Heun, Olaf Ronneberger, Thomas Brox
IEEE Conference on Computer Vision and Pattern Recognition (CVPR), 2013
An iterated L1 Algorithm for Non-smooth Non-convex Optimization in Computer Vision   PaperncitL1.pdf Code/data
Peter Ochs, Alexey Dosovitskiy, T. Pock, Thomas Brox
IEEE Conference on Computer Vision and Pattern Recognition (CVPR), 2013
Variational Attenuation Correction of Two-View Confocal Microscopic Recordings   doi>
Thorsten Schmidt, J. Dürr, Margret Keuper, T. Blein, K. Palme, Olaf Ronneberger
IEEE 10th International Symposium on Biomedical Imaging (ISBI): 169--172, 2013
 
2012
Journal
Insomnia does not appear to be associated with substantial structural brain changes  
K. Spiegelhalder, W. Regen, C. Baglioni, S. Klöppel, Ahmed Abdulkadir, J. Hennig, C. Nissen, D. Riemann, B. Feige
Sleep, in press, 2012
Diagnostic neuroimaging across diseases   doi>
S. Klöppel, Ahmed Abdulkadir, C. Jack Jr, N. Koutsouleris, J. Mourão-Miranda, P. Vemuri
NeuroImage, 61(2): 457--463, Nov 2012
ViBE-Z: A Framework for 3D Virtual Colocalization Analysis in Zebrafish Larval Brains   doi>
Olaf Ronneberger, Kun Liu, M. Rath, D. Rueß, T. Mueller, Henrik Skibbe, Benjamin Drayer, Thorsten Schmidt, A. Filippi, R. Nitschke, Thomas Brox, Hans Burkhardt, W. Driever
Nature Methods, 9(7): 735-742, 2012
Vertebrate kidney tubules elongate using a planar cell polarity–dependent, rosette-based mechanism of convergent extension   doi>
S. Lienkamp, Kun Liu, C. Karner, T. Carroll, Olaf Ronneberger, J. Wallingford, G. Walz
Nature Genetics, 44(12): 1382--1387, Dec 2012
Region based pose tracking with occlusions using 3D models   Paperschmaltz_mva11.pdf doi>
C. Schmaltz, B. Rosenhahn, Thomas Brox, J. Weickert
Machine Vision and Applications, 23(3): 557-577, 2012
Influence of cell-to-cell variability on spatial pattern formation   doi>
B. Greese, K. Wester, Robert Bensch, Olaf Ronneberger, J. Timmer, M. Hülskamp, C. Fleck
IET Systems Biology, 6(4): 143--153, 2012
Discrete Fourier-Invariant Signals: Design and Application   doi>
Maja Temerinac-Ott, M. Temerinac
IEEE Transactions on Signal Processing, 60(3): 1108 - 1120 , 2012
Fast joint estimation of silhouettes and dense 3D geometry from multiple images   Paperkolev_tpami11.pdf doi>
K. Kolev, Thomas Brox, D. Cremers
IEEE Transactions on Pattern Analysis and Machine Intelligence, 34(3): 493-505, 2012
Fast rotation invariant 3D feature computation utilizing efficient local neighborhood operators   doi> Code/data
Henrik Skibbe, M. Reisert, Thorsten Schmidt, Thomas Brox, Olaf Ronneberger, Hans Burkhardt
IEEE Transactions on Pattern Analysis and Machine Intelligence, 34(8): 1563 - 1575 , 2012
Multiview deblurring for 3-D images from light sheet based fluorescence microscopy   doi> Code/data
Maja Temerinac-Ott, Olaf Ronneberger, Peter Ochs, W. Driever, Thomas Brox, Hans Burkhardt
IEEE Transactions on Image Processing, 21(4): 1863-1873, 2012
Shroom3 is required downstream of FGF signalling to mediate proneuromast assembly in zebrafish   doi>
S. Ernst, Kun Liu, S. Agarwala, N. Moratscheck, M. Avci, D. Nogare, A. Chitnis, Olaf Ronneberger, V. Lecaudey
Development, 139(24): 4571--4581, 2012

Conference
Hierarchy of Localized Random Forests for Video Annotation   PaperHRF_dagm2012.pdf
Naveen Shankar Nagaraja, Peter Ochs, Kun Liu, Thomas Brox
Pattern Recognition (Proc. DAGM), Springer, LNCS , 2012
Modeling of Sparsely Sampled Tubular Surfaces Using Coupled Curves   PaperCoupledBSplinesForPointCloudAxisFitting.pdf
Thorsten Schmidt, Margret Keuper, T. Pasternak, K. Palme, Olaf Ronneberger
Pattern Recognition (Proc. DAGM), Springer, LNCS, Vol.7476: 83--92, 2012
Dense 3D Reconstruction with a Hand-held Camera   Paperummenhofer2012Dense3D.pdf
Benjamin Ummenhofer, Thomas Brox
Pattern Recognition (Proc. DAGM), Springer, LNCS, 2012
Blind Deconvolution with PSF Regularization for Wide-field Microscopy   Paperdeconv_keuper.pdf
Margret Keuper, Maja Temerinac-Ott, J. Padeken, P. Heun, Thomas Brox, Hans Burkhardt, Olaf Ronneberger
IEEE International Symposium on Biomedical Imaging (ISBI): 1292 - 1295 , 2012
Higher Order Motion Models and Spectral Clustering   Paperochs_cvpr2012.pdf Code/data
Peter Ochs, Thomas Brox
IEEE International Conference on Computer Vision and Pattern Recognition (CVPR), 2012

Display the complete list (375 publications)
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